CODEN: IJBBBQ ISSN:
0301-1208
|
VOLUME 46 |
NUMBER 2 |
APRIL 2009 |
Papers
|
|
|
Interaction
of nalidixic acid and ciprofloxacin with wild type and mutated
quinolone-resistance-determining region of DNA gyrase A |
147 |
|
Jitendra
Vashist, Vishvanath, Renuka Kapoor, Arti Kapil, |
|
|
|
|
|
Inhibition
of local effects of Indian Daboia/Vipera
russelli venom by the methanolic extract of grape (Vitis vinifera L.) seeds |
154 |
|
Y H
Mahadeswaraswamy, S Devaraja, M
|
|
|
|
|
|
Lentinula
edodes (Shiitake) mushroom extract
protects against hydrogen peroxide induced cytotoxicty in peripheral blood
mononuclear cells |
161 |
|
U R Kuppusamy*, Y L Chong, A A
Mahmood, M Indran, |
|
|
|
|
|
Superoxide
dismutase functional regulation in neonatal hypoxia: Effect of glucose,
oxygen and epinephrine |
166 |
|
|
|
|
|
|
|
Oxidative
stress and sperm mitochondrial |
172 |
|
R Kumar, S Venkatesh, M Kumar, M
Tanwar, M B Shasmsi, R Kumar, |
|
|
|
|
|
Optimization
of physical parameters for lipase production from Arthrobacter sp. BGCC# 490 |
178 |
|
|
|
|
|
|
|
Characterization
of water binding and germination traits of magnetically exposed maize (Zea mays L.) seeds equilibrated at
different relative humidities at two temperatures |
184 |
|
|
|
|
|
|
|
Interactions
of bacterial polysaccharides with cationic dyes: Physicochemical studies |
192 |
|
|
|
|
|
|
Note
|
|
|
Antioxidant and
cytotoxic activities of Caesalpinia
pulcherrima wood |
198 |
|
C R Pawar*, R
|
|
|
|
|
|
201 |
|
|
|
|
|
Instructions to
Authors |
205 |
|
|
|
——————
*Author for correspondence
AUTHOR INDEX
|
161 |
|
|
166 |
|
|
|
166 |
|
178 |
|
|
192 |
|
|
|
161 |
|
|
192 |
|
154 |
|
|
|
154 |
|
172 |
|
|
|
161 |
|
|
198 |
|
|
147 |
|
147 |
|
|
154 |
|
|
154 |
|
|
172 |
|
|
172 |
|
|
172 |
|
|
161 |
|
|
|
198 |
|
|
154 |
|
161 |
|
|
192 |
|
|
198 |
|
|
|
184 |
|
192 |
|
|
|
192 |
|
178 |
|
|
166 |
|
|
198 |
|
|
|
147 |
|
172 |
|
|
|
178 |
|
172 |
|
|
172 |
|
|
147 |
|
|
198 |
|
|
|
172 |
|
172 |
|
|
|
147 |
|
184 |
|
|
172 |
|
|
161 |
|
|
|
147 |
PAPERS
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.147-153
Interaction of nalidixic acid and
ciprofloxacin with wild type and mutated quinolone-resistance-determining region
of DNA gyrase A
Jitendra Vashist1, Vishvanath1, Renuka
Kapoor2, Arti Kapil2, Ragothaman Yennamalli3,
Moganty R Rajeswari1*
1Department
of Biochemistry, 2Department of Microbiology, All India Institute of
Medical Sciences,
3School
of Information Technology,
Received 13 October 2008; revised 28 January 2009
The quinolones exert their anti-bacterial activity by
binding to DNA gyrase A (GyrA), an essential enzyme in maintenance of DNA
topology within bacterial cell. The mutations conferring resistance to
quinolones arise within the quinolone-resistance-determining region (QRDR) of GyrA. Therefore,
quinolones interaction with wild and mutated GyrA can provide the molecular
explanation for resistance. Resistant strains of Salmonella enterica of our hospital have shown mutations in the QRDR of GyrA of serine 83 (to phenylalanine or
tyrosine) or aspartic acid 87 (to glycine or tyrosine). In order to understand
the association between observed resistance and structural alterations of GyrA
with respect to quinolone binding, we have studied the interaction of mutated QRDR of GyrA with nalidixic acid and
ciprofloxacin by molecular modeling using GLIDE v4. Analysis of interaction
parameters like G-score has revealed reduced interaction between nalidixic acid/ciprofloxacin with QRDR of GyrA in all four mutated
cases of resistant strains. The mutation of Ser83 to Phe or Tyr shows least
binding for nalidixic acid, while Asp87 to Gly or Tyr exhibits minimal binding
for ciprofloxacin. The study also highlights the important role of arginines at
21, 91 and His at 45, which form strong hydrogen bonds (at < 3 Å) with
quinolones. The hydrophilic OH group of Serine 83, which is in close proximity
to the quinolone binding site is replaced by aromatic moieties of Tyr or Phe in
mutated GyrA. This replacement leads to steric hindrance for quinolone binding.
Therefore, quinolone resistance developed by Salmonella appears to be
due to the decreased selectivity and affinity of nalidixic acid/ciprofloxacin
to QRDR of GyrA.
Keywords: Gyrase
A, Ciprofloxacin, Nalidixic acid, GLIDE, Quinolone-resistance-determining region mutation
*E-mail: mrraji@hotmail.com
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.154-160
Inhibition of local effects of Indian Daboia/Vipera russelli venom by the methanolic extract of grape (Vitis vinifera L.) seeds
Y H Mahadeswaraswamy, S Devaraja, M
Department of Studies in Biochemistry,
Received 01 May; revised 21 January 2009
Although
anti-venom therapy is available for the treatment of fatal bite by snakes, it
offers less or no protection against the local effects such as dermo- and
myonecrosis, edema, hemorrhage and inflammation at the bitten region. The viper
species are known for their violent local effects and such effects have been
commonly treated with plant extracts without any scientific validation in rural
Keywords: Hyaluronidase, Local effects, Metalloprotease,
Neutralization, Snake venom, Proteolytic activity, Hemorrhagic activity, Edema-inducing activity, Myonecrotic activity, Fibrinogenolytic
activity, Pro-coagulant activity Daboia
russelli, Vipera russelli, Grape
seed, Vitis vinifera L.
*Email: kemparaj@rediffmail.com
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.161-165
Lentinula edodes (Shiitake) mushroom extract protects against hydrogen peroxide induced cytotoxicty in peripheral blood mononuclear cells
U R Kuppusamy*, Y L Chong, A A Mahmood, M
Indran, Noorlidah Abdullah+ and
Department of Molecular Medicine, Faculty of
Medicine, +Institute of Biological Sciences,
Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia
Received 13 June 2008; revised 29 January 2009
Lentinula edodes (Berk) Pegler, commonly known as Shiitake
mushroom has been used as medicinal food in Asian countries, especially in
China and Japan and is believed to possess strong immunomodulatory property. In
the present study, the methanolic extract of the fruit bodies of L. edodes was investigated for
cytoprotective effect against H2O2-induced cytotoxicity
in human peripheral blood mononuclear cells (PBMCs) by measuring the activities
of xanthine oxidase (XO) and glutathione peroxidase (GPx) . H2O2
at a concentration of 5 μM caused 50% inhibition of PBMCs viability.
The extract improved the PBMC viability and exerted a dose-dependent protection
against H2O2-induced cytotoxicity. At 100 μg/ml of
extract concentration, the cell viability increased by 60% compared with the
PBMCs incubated with H2O2 alone. The extract also inhibited XO activity in PBMC, while
showing moderate stimulatory effect on GPx. However, in the presence of H2O2
alone, both the enzyme activities were increased significantly. The GPx
activity increased, possibly in response to the increased availability of H2O2
in the cell. When the cells were pretreated with the extract and washed
(to remove the extract) prior to the addition of H2O2,
the GPx and XO activities as well as the cell viability were comparable to
those when incubated with the extract alone. Thus, it is suggested that one of
the possible mechanisms via which L. edodes methanolic extract confers
protection against H2O2-induced oxidative stress in PBMC
is by inhibiting the superoxide-producing XO and increasing GPx activity which
could rapidly inactivate H2O2.
Keywords: Peripheral blood mononuclear
cells, Lentinus edodes, Oxidative
stress, Cytotoxicity, Glutathione peroxidase, Xanthine oxidase
*Email: umah@um.edu.my
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.166-171
Superoxide dismutase functional regulation in neonatal hypoxia: Effect of glucose, oxygen and epinephrine
T R Anju, Athira Babu and C S Paulose *
Molecular Neurobiology and Cell Biology Unit, Centre for Neuroscience,
Department of
Biotechnology,
Received 18 August 2008; revised 09
February 2009
Hypoxia is one of the major causes of damage to the fetal and neonatal brain and cardiac functions. In earlier studies, we have reported the brain damage caused by hypoxia and resuscitation with oxygen and epinephrine and have found that glucose treatment to hypoxic rats and hypoxic rats treated with oxygen shows a reversal of brain damage. The neonatal rats are shown to be deficient in free radical scavenging system, which offers a high risk of oxidative stress. In the present study, we induced hypoxia in neonatal Wistar rats and resuscitated with glucose, oxygen and epinephrine. Heart tissue and cerebral cortex were used to study the kinetics of superoxide dismutase activity in experimental groups of rats to assess the free radical status. Results showed that glucose supplementation in hypoxia (Hx + G) and hypoxic + oxygen (Hx + O) had an efficient free radical scavenging capability, compared to all other experimental groups. The observation was ascertained by studying the activity of catalase, another antioxidant enzyme in the body. Our results suggested that in neonatal rats during hypoxic condition, damage to heart and brain was more prominent in all groups, except when supplemented with glucose. These findings may have clinical significance in the proper management of heart and brain function.
Keywords: Superoxide dismutase, Neonatal hypoxia, Free radical, Catalase,
Glucose, Oxygen, Epinephrine
*E-mail: cspaulose@cusat.ac.in;
paulosecs@yahoo.co.in
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.172-177
Oxidative stress and sperm mitochondrial
R Kumara,
and Rima Dadaa*
aLaboratory for Molecular Reproduction and Genetics, Department of Anatomy;
bDepartment
of Urology; All India Institute of Medical Sciences,
cAssisted
Reproductive Technique Centre, Army Research and
Received 22
October 2008; revised 20 February 2009
Physiological function of reactive oxygen species (ROS) has been known
since a long, but recently toxic effects of ROS on spermatozoa have gained much
importance in male infertility. Mitochondrial DNA (mtDNA) is believed to be
both source and target of ROS. mtDNA unlike nuclear DNA is not compactly packed
and hence more susceptible to oxidative stress (OS) than nuclear DNA. In the
present study, the role of OS in mitochondrial genome changes was studied in
men with idiopathic infertility. The study included 33 infertile
oligo-asthenozoospermic (OA) men and 30 fertile controls. Semen analyses were
performed and OS was measured by estimating the level of malondialdehye (
Keywords: Reactive oxygen
species, Oxidative stress, Infertility, Antioxidant enzymes, mtDNA mutations,
Assisted reproductive technique, Sperm, Oligoasthenozoospermic
*E-mail: rima_dada@rediffmail.com
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.178-183
Optimization of physical parameters for lipase production from
Arthrobacter sp. BGCC#490
Anjana Sharma*, Dipa Bardhan and Rashmi Patel
Department of P.G.
Studies and Research in Biological Sciences,
Received 01 April 2008; revised 6 January 2009
The physical parameters for the production of thermostable, alkaline lipase from Arthrobacter sp. BGCC# 490 were optimized using response surface methodology (RSM), employing face centered central composite design (FCCCD). The design was employed by selecting pH, temperature and incubation period as the model factors and to achieve maximum yield, interaction of these factors was studied by RSM. A second-order quadratic model and response surface method showed that the optimum conditions for lipase production (pH 10.0, temperature 40oC and incubation period 48 h) resulted in 1.6-fold increase in lipase production (13.75 EUml-1), as compared to the initial level (8.6 EUml-1) after 48 h of incubation, whereas its value predicted by the quadratic model was 12.8 EUml-1. Lipase showed stability in the pH range 8-10 and temperature range 40-60oC, with maximum activity at pH 9.0 and temperature 50oC. Lipase activity was enhanced in the presence of K+, Ca2+ and Mg2+ ions, but inhibited by Hg2+ ions. The enzyme exhibited high activity in the presence of acetone, isopropanol and ethanol, but was unaffected by methanol. These properties suggest that the lipase may find potential applications in the detergent industry. The present work also demonstrated the feasibility of using experimental design tools to optimize physical parameters for lipase production by an indigenous Arthrobacter sp.
Keywords: Alkaline lipase, Arthrobacter
sp., Face centered central composite design, Response surface methodology, Statistical analysis
*E-mail: anjoo_1999@yahoo.com
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.184-191
Characterization
of water binding and germination traits of magnetically exposed maize (Zea mays L.) seeds equilibrated at different relative humidities at two temperatures
Ananta Vashisth1* and Shantha Nagarajan2
1Division of Agricultural Physics ,2Nuclear Research Laboratory
Indian Agricultural Research Institute (IARI),
New Delhi-110012,
Received 25 July 2008; revised 08 December 2008
A study was
undertaken to characterize the water sorption properties and enhancement in
germination and seedling vigour of maize (Zea mays L.) seeds exposed to
static magnetic fields of 100 mT and 200 mT for 2 and 1h, respectively. Water
sorption isotherms were constructed for magnetically- exposed and unexposed
seeds by equilibrating over different saturated salt
solutions at 25 and 35°C. The germination and vigour parameters were evaluated for
magnetically-exposed and unexposed seeds, equilibrated over the wide range of
relative humidities (RHs) at 25 and 35°C. Moisture content
increased with increase in RH and decreased with increase in equilibrium
temperature. The germination and vigour reduced at high
and very low humidities. Magnetically-exposed seeds maintained higher
germination and vigour at both temperatures and all RHs, indicating the better
quality of magnetically- exposed seeds. The leachate conductivity of
magnetically-exposed seeds was lower than unexposed seeds at all RHs,
suggesting better membrane integrity in magnetically-exposed seeds. Analysis of the isotherms using
D’Arcy-Watt equation revealed that irrespective of the temperature, in magnetically-treated seeds weak binding sites were
more and strong and multi-molecular binding sites were less compared to the
unexposed seeds. Total binding sites were more in unexposed control seeds. The
modification of binding properties of seed water and increased seed membrane
integrity in magnetically-exposed seeds might have enhanced the germination
traits and early seedling growth of maize.
Keywords: Magnetic
field, Seed water binding, Sorption isotherm, Seed leachate conductivity,
Germination characteristics, Maize, Zea mays L.
*E-mail: khaliananta@rediffmail.com
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.192-197
Interactions of bacterial polysaccharides with cationic
dyes:
Physicochemical studies
S Dasguptaa, R K Natha,
aDepartment
of Chemistry,
bDepartment
of Chemistry, N S Mahavidyalaya,
cUniversity
of North Bengal, Department of Chemistry,
West Bengal 734 013,
Received 19 June
2008; revised 15 December 2008
Capsular polysaccharides (SPS) are an integral component of gram-negative bacteria, and also have potential use as vaccine. In this paper, interactions of SPS isolated from Klebsiella strains K20 and K51 with cationic dyes pinacyanol chloride (PCYN) and acridine orange (AO) were studied by absorbance and fluorescence measurements. Both the polysaccharides having glucuronic acid as the potential anionic site induced strong metachromasy (blue shift ~100 nm) in the PCYN. The spectral changes were studied at different polymer/dye molar ratios (P/D = 0-40). A complete reversal of metachromasy was observed upon addition of co-solvents, suggesting the breakaway of dye molecules from the biopolymer matrix. Binding constant, changes in free energy, enthalpy and entropy of the dye polymer complex were also computed from the spectral data at different temperatures to reveal the nature of the interaction. Quenching of fluorescence of AO by the polymers and the incorporated mechanisms were also explored.
Keywords: Acridine orange,
Bacterial polysaccharide, Binding constant, Dye-polymer interaction,
Fluorescence quenching, Klebsiella, Metachromasy, Pinacyanol chloride
*Email: akpanda1@yahoo.com
NOTE
Indian
Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.198-200
Antioxidant and cytotoxic activities of Caesalpinia pulcherrima wood
C R Pawar*, R
Department of Pharmacognosy,
+Amrutvahini
College of Pharmacy, Sangamner, Ahmadnagar (MS),
Received 29 April 2008; revised 22 February 2009
Antioxidant and cytotoxic activities of the methanolic and aqueous extracts of Caesalpinia pulcherrima wood were studied in in vitro models. Both extracts exhibited strong antioxidant activity, as evidenced by the low IC50 values in both 1,1-diphenyl-2-picryl hydrazyl (DPPH), nitric oxide and superoxide scavenging methods; the values were found to be less or comparable to those of gallic acid, the standard used. To determine the cytotoxic activity, extracts were tested for toxic effects to brine shrimp larvae. In this assay, the methanolic extract had little effect, but aqueous extract was relatively toxic. The antioxidant and cytotoxic activities may be attributed to the total phenolic content in the wood.
Keywords: Caesalpinia
pulcherrima, Antioxidant activity, Cytotoxic activity, Total phenolic
content
Indian Journal of Biochemistry & Biophysics
Vol. 46, April 2009, pp.201-204
SFRR-India Conference Report 2009
A three day International conference on “Advances
in Free Radical Research: Natural Products, Antioxidants and Radioprotectors”
(AFRR – 2009) was held at the Scientific Convention Centre of C S M Medical
University,
Altogether seven plenary
lectures were delivered during the three-day conference. The first plenary was
delivered by Dr John R Speakman from
Apart from plenary lectures, there were altogether 15 scientific sessions in the conference. In the first session on “Antioxidants and Redox Signaling”, Dr J K Pal (University of Pune, Pune) spoke on the effect of oxidative stress on inhibition of cell proliferation and loss of cell viability that ultimately inhibit protein synthesis. Subsequently, Dr S Santosh Kumar (Bhabha Atomic Research Centre, Mumbai) spoke on the role of cellular redox status in immunomodulation by quinines. Dr Tuli Biswas (Indian Institute of Chemical Biology, Kolkata) briefed about the importance of ROS-mediated apoptotic death of erythrocytes in two phenotypic forms of beta thalassemia.
In session II on “Natural antioxidants and traditional/herbal
medicine”, Prof T Ramasarma (Centre for DNA Fingerprinting &
Diagnostics,
Dr Shariq I Sherwani (The Ohio State University College of Medicine,
The session III on “Diabetes” started with a presentation by
Dr M S Kanthimathi (Department of Molecular Medicine, Faculty of Medicine,
In session IV on “Ageing and Related disorders” Dr Malyn
Chulasiri (Research & Development Division, Mahidol University, Bangkok,
Thailand) gave an interesting lecture on fusion products like cosmeceuticals
that are designed to address appearance and health synergistically.
Cosmeceuticals are natural antioxidants that can provide anti-aging benefits to
improve aging skin. Prof S Asha Devi from
Session V on “Neurological disorders” started with an
interesting presentation by Dr S Chattopadhyay (BARC, Mumbai) on as to how
progenitor prevents daughter’s neurotoxicity. Dr V K Khanna (IITR,
Dr Shakti Aggarwal (
In session VII on “Microbes and oxidative stress” Dr M
Talibkhan Garoussi (Department of Clinical Sciences, Ferdowsi,
Day two of the conference
started with a power-packed session VIII on “Cardiovascular diseases” with a presentation by Dr Michael
Moorehouse (Bioinformatics Department,
Session IX on “Digestive and hepatic diseases” started
with a presentation by Dr T P A Devasagayam (BARC, Mumbai), who briefed about
the mechanism of action of some aminothiazole compounds in hepatoprotection. Dr
S Adhikari also from BARC, Mumbai, spoke on techniques like pulse radiolysis to
understand the efficacy and mechanistic pathway of bilirubin and some
polyphenols. Dr Poonam Kakkar (IITR,
Session X on “Cancer” started with a presentation by
Dr S K Bandyopadhyay (Institute of Basic Medical Sciences & IPGME & R,
Kolkata) on chemopreventive role of resveratrol. Dr Sanjeev Shukla (
Session XI on “Inflammation, immunity and infectious
diseases’’ started with a presentation of Prof R D Lele (Mumbai),
describing various strategies for prevention of chronic oxidative stress. Dr
Irfan Rehman (University of Rochester Medical Center,
Dr Y Chancerelle (Centre
de Rescherches, La Tronche, France) initiated the session XII on “Radiation Biology, radio-sensitization and
radioprotection”. He spoke on the role of stem cells for treatment of
cutaneous injuries. Dr P K Goyal (
On concluding day, three
sessions (XIII, XIV and XV) were held. Dr Q Rahman (
Dr S.S.A. Zaidi (Ahmedabad) in his lecture described the adverse effects of
chromium in occupationally exposed workers. Dr Rajender Singh (CDRI,
In the three days
conference, apart from 7 plenary lectures, 81 invited talks and 67 oral
presentations, there were 223 poster presentations made by the students from
various Institutes/Universities across the country. Of these, ten were selected
for “best poster presentation” awards. Each award carried
Rs. 1500/- in cash and a certificate. At the end of the conference a
valedictory function was held in which prizes were distributed. Prof Angelo
Azzi, President, IUBMB and SFRR–International was the chief guest, while Dr T
Mukherjee (BARC, Mumbai), Dr Dipak K Das (USA) and Mr V P Singh (Registrar, C S
M Medical University,
Prof Abbas Ali Mahdi
Organizing Secretary, SFRR – 2009
Professor & Incharge
Medical Elementology & Free Radical Biology Lab.
Department of Biochemistry
C S M
E-mail: mahdiaa@rediffmail.com